rs3700209 SNP Detail

Summary

• ID
  rs3700209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11073491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATA CTAGAGTGCT TATGAATTGC
  Y
  ATGGGTTAGA TAGTAGCTAT ACTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss5076401	WI_WGS_19_10435389	WI	MOUSE	f	SNP				T	C
ss44990991	mCV24590421	ABI	CRAMUS_MOUSE	f	SNP	C	C	C		C	T
ss146048157	ENSMUSSNP4082699	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs3700209					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11073491 () rs orientation: forward

Symbol	Name	Function Class
Ms4a20	membrane-spanning 4-domains, subfamily A, member 20	687 bp downstream
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Rr394119	regulatory region 394119	985 bp downstream
Tssr158291	transcription start site region 158291	777 bp downstream