rs37002422 SNP Detail

Summary

• ID
  rs37002422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33898201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGATGAAG TCAGGCCACA
  AGAGGTGCAA ATGAGCAGCG CGGCACCTGT ACGTGGGACT TGGTCTTCCC TGGCCCTCCC
  CCGGATTCCC ACTGGATACC CACCTAGCCC AGCATCCTCT ATTTACACTC CTTACCTAGT
  CTTTACCTGG TCATCCATTG GCAGTCCTGG CGGCGTTCAA CCAGCCCTTT TACCATTCCT
  Y
  AGCTGTTCCC CTCTGGTCGT CTCTCCCCTA AATCCCACCC GGTCCTCCTC ACCTGATCCT
  CCAGGATCTT GTTCTCCTGA TTGGCCACGG GGATGGCGAA CCCATCTTCC CAGTGCAGCT
  CTGACAAGAA CTCACTGCAC ATGGCGTACG AGGCTCAAAG GAATCACAGA CAAGCCACCC
  AAAACCGTTC CCTGGAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51450280	NES14437874	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37002422					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51450280	NES14437874	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33898201 () rs orientation: forward

Symbol	Name	Function Class
Ccdc39	coiled-coil domain containing 39	within coordinates
Rr575077	regulatory region 575077	239 bp proximal
Tssr32964	transcription start site region 32964	160 bp downstream
Tssr32965	transcription start site region 32965	203 bp downstream