rs37003558 SNP Detail

Summary

• ID
  rs37003558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40344759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG CAGATCACTC CGGAGCTGGC
  R
  TCCTTGGCAA CCGCCTTGTG TTGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50677675	NES14011112	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G		A	G	G		G
ss136329970	ENSMUSSNP261861	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss322916118	CHEV_9_40241048	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37003558					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677675	NES14011112	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40344759 () rs orientation: forward

Symbol	Name	Function Class
Gm51668	predicted gene, 51668	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676831	regulatory region 676831	within coordinates
Tssr88924	transcription start site region 88924	1566 bp downstream
Tssr88925	transcription start site region 88925	1638 bp downstream
Tssr88926	transcription start site region 88926	1682 bp downstream
Tssr88927	transcription start site region 88927	1693 bp downstream
Tssr88928	transcription start site region 88928	1770 bp downstream