rs37003565 SNP Detail

Summary

• ID
  rs37003565
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:21574392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGCTATG GGAGTTTAAA
  GGATGGCCCT ACTTCCAGGT CACTTCCAGC TTCCTGTTCC AGCTGTCGTG CCTGCATGCT
  GCCATGCCTC ACCACCAGGA TGGACTCTGA CCCCCGGAAG GAGTTAGAAA CCCAAATACT
  CTAAGCTGCT TTGGCCATGG GATTTTACAC TCTGGAAACT TGAGATGCAA CCATGAGTAC
  R
  TATGGCTAAT GCCAAGGCAG TTACCTGCTT GCTCTCCCAC GTGGAGCTCA TGTCCATACA
  TGAGTTGGTG CATACTTGTG TGCTCAAAGC CCACACTCGT ACTCTTACGA GAGAGATGTC
  TTACTTTCCT CTGAGCCCCC CTCTCTTAAG TTTAGGCTTT GAGTTTAAGC CTAAACTAAA
  ATATCTTCAA TAAAATCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50694217	NES13603146	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	A	A		G
ss325752839	CHEV_19_21671518	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37003565					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50694217	NES13603146	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21574392 () rs orientation: forward

Symbol	Name	Function Class
1110059E24Rik	RIKEN cDNA 1110059E24 gene	285 bp downstream
Gm38486	predicted gene, 38486	826 bp upstream
Gm59243	predicted gene, 59243	within coordinates
Rr364167	regulatory region 364167	1010 bp proximal