rs37005260 SNP Detail

Summary

• ID
  rs37005260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:70441578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAAGCAGCC AGCAGCAGTG
  CCCTCATCCC TACCACCAGG GCCAGGGAGA GCATGGGAGA GCATTGGCAG GCAGGCAGGG
  AGCCACTTCT GAGATCTAGG GAATGTGGGG CTGCCCGCTG GCCTCCTGTG CACATCAGGG
  CTCCAGAACA CTCAGAGCCA GCGCTGGGGG AAATGGAAGG GAAAGCAGCA GATGGCAGCA
  Y
  CAGAGGACCT GCTTCTGCCC TGGGGGTGGT GCTGAGGTTT TTCTCCTGCA CACCGACCAA
  TGCTCCTGTA CCCACAAGCT TGGCTTTGAA GGGAGGCTCC TTCCTGACTC AGAGCATCTG
  CCTGACAAGC CAGTCGGTTC TGCCTCACCC GGGGGTCAGC AGAAGGGAGC TCGGGGCACC
  TGGGAGATGG GTGAGCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51532216	NES14630566	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37005260					SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51532216	NES14630566	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70441578 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6688	CpG island 6688			1498 bp proximal
Gm26908	predicted gene, 26908			within coordinates
Gm49417	predicted gene, 49417			1195 bp upstream
Rr494880	regulatory region 494880			within coordinates
Rr494881	regulatory region 494881			484 bp proximal
Rr494882	regulatory region 494882			1108 bp proximal
Rr494883	regulatory region 494883			1206 bp proximal
Rr494884	regulatory region 494884			1883 bp proximal
Sorbs3	sorbin and SH3 domain containing 3			Intron
				Noncoding-Transcript-Variant
Tssr126403	transcription start site region 126403			722 bp downstream
Tssr126404	transcription start site region 126404			1042 bp upstream
Tssr126405	transcription start site region 126405			1096 bp upstream
Tssr126406	transcription start site region 126406			1115 bp upstream
Tssr129550	transcription start site region 129550			676 bp upstream
Tssr129551	transcription start site region 129551			663 bp upstream
Tssr129552	transcription start site region 129552			649 bp upstream
Tssr129553	transcription start site region 129553			1697 bp downstream
Tssr129554	transcription start site region 129554			1744 bp downstream
Tssr129555	transcription start site region 129555			1856 bp downstream
Tssr129556	transcription start site region 129556			1909 bp downstream
Tssr129557	transcription start site region 129557			1953 bp downstream
Tssr129558	transcription start site region 129558			1982 bp downstream