rs3700582 SNP Detail

Summary

• ID
  rs3700582
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84926151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAC AGGATCACGC TCTGCAGCAC
  S
  GGTTGACATT TAACCTGTGA TTTTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J
ss5076781	WI_WGS_8_83894986	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J
rs3700582					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84926151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20681	CpG island 20681	1449 bp distal
Cpgi20682	CpG island 20682	710 bp distal
Cpgi20683	CpG island 20683	620 bp proximal
Gm26887	predicted gene, 26887	798 bp upstream
Gm37352	predicted gene, 37352	1347 bp upstream
Gm56830	predicted gene, 56830	937 bp upstream
Gm56836	predicted gene, 56836	324 bp downstream
Gm64014	predicted gene, 64014	455 bp downstream
Gm64130	predicted gene, 64130	1615 bp downstream
Gm65345	predicted gene, 65345	1422 bp upstream
Rr186982	regulatory region 186982	350 bp distal
Rr186983	regulatory region 186983	249 bp proximal
Rr368563	regulatory region 368563	1963 bp downstream
Tssr2624	transcription start site region 2624	736 bp downstream
Tssr78372	transcription start site region 78372	1313 bp upstream
Tssr78373	transcription start site region 78373	1338 bp upstream
Tssr78374	transcription start site region 78374	1409 bp upstream
Tssr82076	transcription start site region 82076	1929 bp upstream
Tssr82077	transcription start site region 82077	1842 bp upstream
Tssr82078	transcription start site region 82078	1563 bp upstream
Tssr82079	transcription start site region 82079	1158 bp upstream
Tssr82080	transcription start site region 82080	1128 bp upstream
Tssr82081	transcription start site region 82081	1099 bp upstream
Tssr82082	transcription start site region 82082	1095 bp downstream
Tssr82083	transcription start site region 82083	1208 bp downstream