rs3700656 SNP Detail

Summary

• ID
  rs3700656
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71230215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAACC CGACTGGAAT TAAAAGCAAG
  W
  GCTATGACGC CCAGCGTTTT GGATT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5076855	WI_WGS_8_70182061	WI	MOUSE	f	SNP	T			A
ss46232328	mCV27563046	ABI	CRAMUS_MOUSE	f	SNP		T	A	A	T
ss145131472	ENSMUSSNP2575538	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		T
ss322701506	CHEV_8_73301470	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3700656					SNP	T	T	A	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71230215 () rs orientation: forward

Symbol	Name	Function Class
2010320M18Rik	RIKEN cDNA 2010320M18 gene	within coordinates
Cpgi20500	CpG island 20500	within coordinates
Mast3	microtubule associated serine/threonine kinase 3	546 bp downstream
Pik3r2	phosphoinositide-3-kinase regulatory subunit 2	859 bp upstream
Rr186787	regulatory region 186787	within coordinates
Rr368551	regulatory region 368551	163 bp downstream
Rr400915	regulatory region 400915	657 bp downstream
Tssr77827	transcription start site region 77827	798 bp downstream
Tssr77828	transcription start site region 77828	742 bp downstream
Tssr77829	transcription start site region 77829	674 bp downstream
Tssr77830	transcription start site region 77830	207 bp downstream
Tssr81673	transcription start site region 81673	931 bp upstream
Tssr81674	transcription start site region 81674	855 bp upstream
Tssr81675	transcription start site region 81675	840 bp upstream