rs37007220 SNP Detail

Summary

• ID
  rs37007220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26383470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAGTCTT AGAAAGTGCA
  AGTCTTGTGA CTCTCCTTAT AAGTGATTGA AACATAACTA AGAGATTATA ATTTAATAGA
  CTGAAAATGG TCATCAAATG TCACATAAGG AAGACAGACC ATGGCAAAAT ACATTAGATT
  CTATTGTCAA TCTGCTGAAA TTTCTGGTCT TACTGTTAAT TCCAGCTGTG CTTTGCTTTA
  Y
  AAAAACTACC TTCACATAGG TAATTTATGA AGTAACTCTT CAGTAGGGGC AGGATCTTCT
  AGAGACATCC ATGACTAAGC TTTTCTAAAA ATGTTAAAAA TTGATTTAAC ACTTGGAAAC
  TCAGAGAAAG GTATACCAAT TACATGAGAT AGATAGATAG ATAGATAGAT AGATAGATAG
  ATAGATTAAA AACCATCGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51444686	NES14435717	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37007220					SNP	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51444686	NES14435717	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26383470 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	1829 bp upstream
Cpgi13015	CpG island 13015	1973 bp proximal
Nlgn1	neuroligin 1	Intron
Rr574316	regulatory region 574316	1407 bp proximal
Rr574317	regulatory region 574317	1908 bp proximal
Tssr32829	transcription start site region 32829	1716 bp downstream