rs37008158 SNP Detail

Summary

• ID
  rs37008158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123129889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGACCC TTGAGCTCTA
  ACTTCAGGCT GATTGTCCCC CAGGAGCTGA GAATAGGTGA GAAATAGGAA AGGGGGCTTC
  TTTTGAGAAA GATGAGCTTT TAACACAAGC CAGCCTCATT GGAAATGAAA TAATGTCTTC
  CTGTACCGCC CTTGTAAAAG GCTCAGTCAG ATCCTACCTG TGTTAGTCTG TTGTATCATC
  Y
  CAGGCCAATT GAGCAACTCT GTGTCCAAAG ACAAGGGGGC AGAAGACAGA AATGACAACT
  TCGCTTACAC ACACACATAC ACACATACCC CGTGAGCTTG ACTGTCCCTG GATGGAGCAC
  TCAGAAACTC AGGGATTCTG GACTAGGAGC AAACAAATTT ATGTTGTTAT TCTAGCTCTT
  GGCTTTCCTA GCCCTAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51195101	NES13813334	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37008158					SNP	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195101	NES13813334	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123129889 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	351 bp downstream
Rr620035	regulatory region 620035	1885 bp distal
Rr620036	regulatory region 620036	1010 bp distal
Rr620037	regulatory region 620037	within coordinates
Tssr48737	transcription start site region 48737	1883 bp downstream
Tssr48738	transcription start site region 48738	1057 bp downstream
Tssr48739	transcription start site region 48739	1046 bp downstream
Tssr48740	transcription start site region 48740	1001 bp downstream
Tssr48741	transcription start site region 48741	962 bp downstream
Tssr53175	transcription start site region 53175	1536 bp upstream
Tssr53176	transcription start site region 53176	1419 bp upstream
Tssr53177	transcription start site region 53177	1363 bp upstream
Tssr53178	transcription start site region 53178	1331 bp upstream
Tssr53179	transcription start site region 53179	1297 bp upstream
Tssr53180	transcription start site region 53180	1253 bp upstream