rs3701014 SNP Detail

Summary

• ID
  rs3701014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104695200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTG AGATGACAGG CATGAACCAC
  Y
  CGGCCAGCTG CACCTGCAGT AGACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss5077214	WI_WGS_3_104897003	WI	MOUSE	f	SNP	T					C
ss45498874	mCV22806141	ABI	CRAMUS_MOUSE	f	SNP		T						C
ss60431860	NES15936362	PERLEGEN	MM_PANEL2	f	SNP		T	C	C	T		C	C	C		C	C	C
ss135571329	ENSMUSSNP2313998	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs3701014					SNP	T	T	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431860	NES15936362	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104695200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	660 bp proximal
Gm66976	predicted gene, 66976	425 bp downstream
Ppm1j	protein phosphatase 1J	1866 bp downstream
Rhoc	ras homolog family member C	1150 bp upstream
Rr77009	regulatory region 77009	400 bp proximal
Tssr31056	transcription start site region 31056	688 bp upstream
Tssr31057	transcription start site region 31057	909 bp upstream
Tssr31058	transcription start site region 31058	958 bp upstream
Tssr31059	transcription start site region 31059	1142 bp upstream