rs3701340 SNP Detail

Summary

• ID
  rs3701340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:76025376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGC AAAGAAACTG TAGCCTCATT
  Y
  AGCCAAACTT TTGAATGAAT ACTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5077540	WI_WGS_13_72961854	WI	MOUSE	f	SNP	T			C
ss144640879	ENSMUSSNP607373	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss324437465	CHEV_13_76014705	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3701340					SNP	T	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:76025376 () rs orientation: forward

Symbol	Name	Function Class
Rhobtb3	Rho-related BTB domain containing 3	within coordinates
Rr273737	regulatory region 273737	1576 bp distal
Rr273738	regulatory region 273738	625 bp proximal
Rr277199	regulatory region 277199	1975 bp distal
Rr277200	regulatory region 277200	1576 bp distal
Rr277201	regulatory region 277201	776 bp distal
Rr277202	regulatory region 277202	376 bp distal
Rr286330	regulatory region 286330	668 bp proximal