rs37013405 SNP Detail

Summary

• ID
  rs37013405
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:6169144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCATTGAA AAGGTCACAT
  TTGCTATTGT CAAGGTTCTT TGGGTCATTC ACCAGACCCC ACCTCCTCCG ATTTTGAATT
  TTTCAAATGA ACTCAGAAGG CATTCTCTGG AAAGGATTCT CCTGCCTGCT CCTCACCCTT
  CCCCACCCCC CCCACCCCCC GCTAAAATTG CCCCTCATTC TATAACTACT AGAGAGTGTT
  K
  TGAAGTGTCC TGGAGGCCAC TGGGGGAAGT GCTGGAGTAC ACTGGGGGGT GGGGTCAAGT
  GGCTTTCTCC CTGCAACTTA GAATCATATC AGTAGGTGTG TGTCCTGGAG TAGTTGACAC
  CAGGATGTGG GTGTCTCCTT CCAGGCTTTG AAAGCTGCAG GCTGTGCTCA TCTTGGCATT
  GTGGTGGGCG GTGGAGTCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50640635	NES14035633	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37013405					SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640635	NES14035633	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:6169144 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21338	CpG island 21338	231 bp distal
Pdgfd	platelet-derived growth factor, D polypeptide	within coordinates
Tssr2757	transcription start site region 2757	450 bp downstream
Tssr83664	transcription start site region 83664	684 bp downstream
Tssr83665	transcription start site region 83665	656 bp downstream
Tssr83666	transcription start site region 83666	577 bp downstream
Tssr83667	transcription start site region 83667	549 bp downstream
Tssr83668	transcription start site region 83668	527 bp downstream
Tssr83669	transcription start site region 83669	473 bp downstream