rs3701417 SNP Detail

Summary

• ID
  rs3701417
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145401393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACCATCCGC CCCCATGATG CATTGCGTTG TCAAAGGCCA
  GAAGAAAGGA GGCTAGTGAC CATAGACTGA ACCCTCTAAT CCCATGAGCC AAAAACAAAT
  M
  TCTCTTTTCA GCTGATTATC CCCTGGTATT TTATGACTCT GACAGGAAGC TGAGCTGACA
  CAGAAAAAGA TTGGGTTTGC AGAGATTGTA TGCAGTGTG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5077617	WI_WGS_2_146617025	WI	MOUSE	f	SNP	A			C
ss45272900	mCV23985225	ABI	CRAMUS_MOUSE	f	SNP		A	C	C	A
ss147835220	ENSMUSSNP650104	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3701417					SNP	A	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145401393 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566544	regulatory region 566544			1628 bp distal
Rr566545	regulatory region 566545			1726 bp distal
Slc24a3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3			Intron
				Noncoding-Transcript-Variant