rs3701508 SNP Detail

Summary

• ID
  rs3701508
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51631435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGGGGTG CCAGAGGATG
  CTTAAGAGCT TGTAGCTCAC AATGAAGATA ACCAGAAGTA ACCAGAAGTC CAGTGGGCCT
  AAGTGTGTAG CACAGCCTCC CACAGCTCTG CCCAAGGATG CTCAAAGAAG TCTGCTTTAA
  TTCCATCCAC TGAGACAAAA CTTGCTTTCA TTCTGGGTCT TCAAAGGTAG CAAACACTGT
  Y
  AAATTGCCCA GTTGACATAT GGGAAATACT GTCAAGAAAA TACCTAAATT ATCAAAGGGA
  ACTAAATTTT TTGTTTGTTC TGACAGAGTG CATTGGAGCT GTGTTCCCCT TCTCTTGCAA
  ATGCCCTCTT GGCTCTTGGT CTCTCACAAC CTTAGTCCCT TTTCATAGAT AGTTCTACAG
  AGTGGAAGCA GCATTCTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5077710	WI_WGS_1_52151146	WI	MOUSE	f	SNP	C						T
ss47350142	NES11070501	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T		T	T	T	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3701508					SNP	C	T	T	T	T	T	T	T	T	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350142	NES11070501	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51631435 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	1722 bp upstream
Rr410724	regulatory region 410724	1530 bp proximal
Tssr6634	transcription start site region 6634	1717 bp upstream
Tssr6635	transcription start site region 6635	1894 bp upstream
Tssr6636	transcription start site region 6636	1972 bp upstream