rs3701529 SNP Detail

Summary

• ID
  rs3701529
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51631443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGAGGA TGCTTAAGAG
  CTTGTAGCTC ACAATGAAGA TAACCAGAAG TAACCAGAAG TCCAGTGGGC CTAAGTGTGT
  AGCACAGCCT CCCACAGCTC TGCCCAAGGA TGCTCAAAGA AGTCTGCTTT AATTCCATCC
  ACTGAGACAA AACTTGCTTT CATTCTGGGT CTTCAAAGGT AGCAAACACT GTTAAATTGC
  M
  CAGTTGACAT ATGGGAAATA CTGTCAAGAA AATACCTAAA TTATCAAAGG GAACTAAATT
  TTTTGTTTGT TCTGACAGAG TGCATTGGAG CTGTGTTCCC CTTCTCTTGC AAATGCCCTC
  TTGGCTCTTG GTCTCTCACA ACCTTAGTCC CTTTTCATAG ATAGTTCTAC AGAGTGGAAG
  CAGCATTCTC AACGAGTAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5077731	WI_WGS_1_52151154	WI	MOUSE	f	SNP	A			C
ss45136309	mCV23215679	ABI	CRAMUS_MOUSE	f	SNP		A	C		C
ss149111831	ENSMUSSNP413686	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3701529					SNP	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51631443 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	1714 bp upstream
Rr410724	regulatory region 410724	1522 bp proximal
Tssr6634	transcription start site region 6634	1709 bp upstream
Tssr6635	transcription start site region 6635	1886 bp upstream
Tssr6636	transcription start site region 6636	1964 bp upstream