rs3701567 SNP Detail

Summary

• ID
  rs3701567
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51631464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAGCTCA CAATGAAGAT
  AACCAGAAGT AACCAGAAGT CCAGTGGGCC TAAGTGTGTA GCACAGCCTC CCACAGCTCT
  GCCCAAGGAT GCTCAAAGAA GTCTGCTTTA ATTCCATCCA CTGAGACAAA ACTTGCTTTC
  ATTCTGGGTC TTCAAAGGTA GCAAACACTG TTAAATTGCC CAGTTGACAT ATGGGAAATA
  Y
  TGTCAAGAAA ATACCTAAAT TATCAAAGGG AACTAAATTT TTTGTTTGTT CTGACAGAGT
  GCATTGGAGC TGTGTTCCCC TTCTCTTGCA AATGCCCTCT TGGCTCTTGG TCTCTCACAA
  CCTTAGTCCC TTTTCATAGA TAGTTCTACA GAGTGGAAGC AGCATTCTCA ACGAGTAGAT
  GTCAGCTGGG GTTCAGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5077769	WI_WGS_1_52151175	WI	MOUSE	f	SNP	T							C
ss44984358	mCV23215678	ABI	CRAMUS_MOUSE	f	SNP		T	C							C
ss47350148	NES11070503	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	T	T	C	C	T
ss149111834	ENSMUSSNP2253082	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3701567					SNP	T	T	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350148	NES11070503	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51631464 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	1693 bp upstream
Rr410724	regulatory region 410724	1501 bp proximal
Tssr6634	transcription start site region 6634	1688 bp upstream
Tssr6635	transcription start site region 6635	1865 bp upstream
Tssr6636	transcription start site region 6636	1943 bp upstream