rs37019487 SNP Detail

Summary

• ID
  rs37019487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:16112366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAATAAGC CAGAGCAATG
  GGGAAACTGG GTAAGCCTGT CCACCCTCAT CATTTCTGTT TCTTCTCAAG GCTGAAAATG
  GAATGTCTTA TCTTTTTTTT TTTTTTTTAA TTGAGAAGGG AGAAGCAAGG GCAAGTGGGA
  TAAATATATG TTGATCCAGT ATACAATTAA GAGGAAAGAC ACGTGTTTTA GAGATTTTTC
  Y
  CTTAGACCTG GCTTTTAATT TTCCTTTGTT TATAGTCTTC ATATGTTTGT GTTTAGCTAG
  GAACAGGGCA TTTGAGGTCT CATTGACCAA ACTTATTTGC CTGAAATTTG ACAGCTCCAG
  GTTTCCCAGC AGCTATGAGT TAGGTTTGTC AGAGGGCCTA GGTTTACATG CCTGAGAGGG
  GAATACACTT AGAGAGATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50637942	NES13610166	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T	T	T	T		T	T	T	T		C
ss146085848	ENSMUSSNP3859777	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss325724223	CHEV_19_16209492	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37019487					SNP	T	C	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50637942	NES13610166	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:16112366 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10651	CpG island 10651	912 bp distal
Gnaq	guanine nucleotide binding protein, alpha q polypeptide	Intron
Rr544692	regulatory region 544692	484 bp distal
Rr544693	regulatory region 544693	118 bp proximal
Tssr155383	transcription start site region 155383	1857 bp downstream
Tssr155384	transcription start site region 155384	1674 bp downstream