rs3702068 SNP Detail

Summary

• ID
  rs3702068
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141150122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATCGAGG TGCGGGCTGA
  GAAGGTGAGT CTGGCCCCTG GCCCGCCCCA GGGTCCCCAC CTTTGCTCCT GCACTCTGCC
  TGGTCTAGCC TGGTCTCTGG GCCCTACTTT CCCCCTATCT TTGTAGGCTT CGTACCCTGA
  TTTATGTTCC TTCCCTGTCT GTACCCAGGG TAAACTACAG CCCTTTCCCA GTGGGCTCAC
  R
  GGCCAGGGAC CTTTACAGTC CCTCTCCAAC CTAAGGGTCA CAGAACCTGT CTTTGGGGAC
  CATGCCATGG CACCTGAGGA CCCTCTAGGG ATGGGCAAGG GATCCTGGGA TGAGGTCAGA
  GAGGAACCTG AGTGATGGAG ATGTAAGGGG GGTGAGGAGA TGAGGACAGT CACCATGGTG
  GAAAGTGACC ACGGTGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5078272	WI_WGS_4_139165840	WI	MOUSE	f	SNP	A			G
ss147736074	ENSMUSSNP4441400	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3702068					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141150122 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	971 bp distal
Gm70184	predicted gene, 70184	1752 bp upstream
Gm70191	predicted gene, 70191	1535 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40054	transcription start site region 40054	1135 bp downstream
Tssr40055	transcription start site region 40055	1122 bp downstream
Tssr40056	transcription start site region 40056	1101 bp downstream
Tssr40057	transcription start site region 40057	1040 bp downstream
Tssr40058	transcription start site region 40058	1013 bp downstream
Tssr40059	transcription start site region 40059	989 bp downstream
Tssr40060	transcription start site region 40060	929 bp downstream
Tssr40061	transcription start site region 40061	919 bp downstream
Tssr40062	transcription start site region 40062	288 bp downstream
Tssr40063	transcription start site region 40063	1185 bp upstream
Tssr40064	transcription start site region 40064	1245 bp upstream
Tssr40065	transcription start site region 40065	1260 bp upstream
Tssr40066	transcription start site region 40066	1389 bp upstream
Tssr40067	transcription start site region 40067	1437 bp upstream
Tssr40068	transcription start site region 40068	1489 bp upstream
Tssr40069	transcription start site region 40069	1621 bp upstream
Tssr40070	transcription start site region 40070	1706 bp upstream
Tssr40071	transcription start site region 40071	1730 bp upstream
Tssr40072	transcription start site region 40072	1775 bp upstream
Tssr40073	transcription start site region 40073	1798 bp upstream
Tssr40074	transcription start site region 40074	1823 bp upstream
Tssr40075	transcription start site region 40075	1836 bp upstream
Tssr40076	transcription start site region 40076	1863 bp upstream
Tssr40077	transcription start site region 40077	1882 bp upstream
Tssr44314	transcription start site region 44314	172 bp upstream
Tssr44315	transcription start site region 44315	1223 bp downstream
Tssr44316	transcription start site region 44316	1306 bp downstream
Tssr44317	transcription start site region 44317	1364 bp downstream
Tssr44318	transcription start site region 44318	1747 bp downstream