rs3702075 SNP Detail

Summary

• ID
  rs3702075
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141150130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCC CAGTGGGCTC ACGGGCCAGG
  K
  ACCTTTACAG TCCCTCTCCA ACCTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5078279	WI_WGS_4_139165848	WI	MOUSE	f	SNP	T							G
ss37786208	NES09121471	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	T	G		T	T	T	G	T	G	T	T
ss147736079	ENSMUSSNP1234851	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3702075					SNP	T	T	G	G	G	T	G	G	T	T	T	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786208	NES09121471	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141150130 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	979 bp distal
Gm70184	predicted gene, 70184	1760 bp upstream
Gm70191	predicted gene, 70191	1527 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40054	transcription start site region 40054	1143 bp downstream
Tssr40055	transcription start site region 40055	1130 bp downstream
Tssr40056	transcription start site region 40056	1109 bp downstream
Tssr40057	transcription start site region 40057	1048 bp downstream
Tssr40058	transcription start site region 40058	1021 bp downstream
Tssr40059	transcription start site region 40059	997 bp downstream
Tssr40060	transcription start site region 40060	937 bp downstream
Tssr40061	transcription start site region 40061	927 bp downstream
Tssr40062	transcription start site region 40062	296 bp downstream
Tssr40063	transcription start site region 40063	1177 bp upstream
Tssr40064	transcription start site region 40064	1237 bp upstream
Tssr40065	transcription start site region 40065	1252 bp upstream
Tssr40066	transcription start site region 40066	1381 bp upstream
Tssr40067	transcription start site region 40067	1429 bp upstream
Tssr40068	transcription start site region 40068	1481 bp upstream
Tssr40069	transcription start site region 40069	1613 bp upstream
Tssr40070	transcription start site region 40070	1698 bp upstream
Tssr40071	transcription start site region 40071	1722 bp upstream
Tssr40072	transcription start site region 40072	1767 bp upstream
Tssr40073	transcription start site region 40073	1790 bp upstream
Tssr40074	transcription start site region 40074	1815 bp upstream
Tssr40075	transcription start site region 40075	1828 bp upstream
Tssr40076	transcription start site region 40076	1855 bp upstream
Tssr40077	transcription start site region 40077	1874 bp upstream
Tssr44314	transcription start site region 44314	180 bp upstream
Tssr44315	transcription start site region 44315	1215 bp downstream
Tssr44316	transcription start site region 44316	1298 bp downstream
Tssr44317	transcription start site region 44317	1356 bp downstream
Tssr44318	transcription start site region 44318	1739 bp downstream