rs37022205 SNP Detail

Summary

• ID
  rs37022205
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:113659065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACGGGCCA AGGAGTAAGA
  AGGATGTGCC CTGTGGCTGA TGGAATTGGC CTCAGGGCAA AGAGGACACC CAAGACTTAT
  CCAGGTATCC ATGGAAACCC AAAGGTGGAG ACTTGAGCTT CCTTTCCCTG GCTGTGACTG
  TGAGTGGCCC TGGAGACAGC TGGGGTGTAA GACACGGGTG GCTGGAAGTA TAACATCTAG
  Y
  GGTGTGAGGT GAGGAGTGCC GCATCTGTGT GAGGTGGGTT CCTGACAGAC CTCAGCTGTG
  TCACAGCCTG TGACACACTC GAGAATTTGC TAGCTTAGCG CCTCTGACAG GCAACTTAAT
  TCCTGTGCCT CAGTTTCCCC ATATTGTAAA GGGAATCTGC GCAAGTGTTC ACCCCAGAGG
  ATTGTTCTGA AAAATCTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51794394	NES14722575	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs37022205					SNP	C	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794394	NES14722575	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:113659065 () rs orientation: forward

Symbol	Name	Function Class
Tssr48022	transcription start site region 48022	354 bp downstream
Tssr48023	transcription start site region 48023	294 bp downstream
Wscd2	WSC domain containing 2	within coordinates