rs37022610 SNP Detail

Summary

• ID
  rs37022610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8060222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAGATAG TATTTGATGG
  AAAGGCCATT GAGGGGAAAT CAGACACAGT CGCAAGTTTA CACACAGAGA AAAATGAAGT
  AGAGTTTAAT AATGGTATGA CTGTCAAAGT AAACAATCAG CTCACCCTTG ACAGTCACAC
  AAAGTACTTC CACAAGTTGA GTGTTCCTAG GCTGGACTTC TCCAGTAAGG CTTCTCTTAA
  Y
  AATGAAATCA AGACACTATT AGAAGCTGGA CATGTGGCAT TGACATCTTC AGGGACAGGG
  TCATGGAACT GGGCCTGTCC CAACTTCTCG GATGAAGGCA TACATTCGTC CCAAATTAGC
  TTTACTGTGG ATGGTCCCAT TGCTTTTGTT GGACTATCCA ATAACATAAA TGGCAAACAC
  TTACGGGTCA TCCAAAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50958143	NES14429017	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37022610					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50958143	NES14429017	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8060222 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr3782	transcription start site region 3782	1510 bp downstream
Tssr112644	transcription start site region 112644	1932 bp downstream
Tssr112645	transcription start site region 112645	1830 bp downstream
Tssr112646	transcription start site region 112646	1801 bp downstream
Tssr112647	transcription start site region 112647	1629 bp downstream
Tssr112648	transcription start site region 112648	1607 bp downstream
Tssr112649	transcription start site region 112649	1125 bp downstream
Tssr112650	transcription start site region 112650	1045 bp downstream
Tssr112651	transcription start site region 112651	993 bp downstream
Tssr112652	transcription start site region 112652	963 bp downstream
Tssr112653	transcription start site region 112653	944 bp downstream
Tssr112654	transcription start site region 112654	930 bp downstream
Tssr112655	transcription start site region 112655	907 bp downstream
Tssr112656	transcription start site region 112656	887 bp downstream
Tssr112657	transcription start site region 112657	873 bp downstream
Tssr112658	transcription start site region 112658	840 bp downstream
Tssr112659	transcription start site region 112659	761 bp downstream
Tssr112660	transcription start site region 112660	637 bp downstream
Tssr112661	transcription start site region 112661	402 bp downstream
Tssr112662	transcription start site region 112662	161 bp downstream
Tssr112663	transcription start site region 112663	64 bp upstream
Tssr112664	transcription start site region 112664	89 bp upstream
Tssr112665	transcription start site region 112665	254 bp upstream
Tssr112666	transcription start site region 112666	263 bp upstream
Tssr112667	transcription start site region 112667	310 bp upstream
Tssr112668	transcription start site region 112668	448 bp upstream
Tssr112669	transcription start site region 112669	533 bp upstream
Tssr112670	transcription start site region 112670	586 bp upstream
Tssr112671	transcription start site region 112671	701 bp upstream
Tssr112672	transcription start site region 112672	1280 bp upstream
Tssr112673	transcription start site region 112673	1323 bp upstream
Tssr112674	transcription start site region 112674	1424 bp upstream
Tssr112675	transcription start site region 112675	1451 bp upstream
Tssr112676	transcription start site region 112676	1554 bp upstream
Tssr112677	transcription start site region 112677	1704 bp upstream
Tssr112678	transcription start site region 112678	1828 bp upstream
Tssr112679	transcription start site region 112679	1853 bp upstream
Tssr112680	transcription start site region 112680	1872 bp upstream
Tssr112681	transcription start site region 112681	1919 bp upstream
Tssr112682	transcription start site region 112682	1932 bp upstream
Tssr112683	transcription start site region 112683	1969 bp upstream