rs37024606 SNP Detail

Summary

• ID
  rs37024606
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38534927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTCAAAC AAGCAAAAAG
  TGAAATTGCA AACATGGAAG GATTATATTT GTAATCCTAG CATTCTACCA TTTGGGAGGC
  TGAAGCTGGA AGATGATGCG TTTTGAGGTC AATGTAGGTT TCAACGGAAA AAAAAAAGAT
  GTGTGAAGCA GTTCAGAACT GCTACTTTTG AGGAAATATA AACAGGCCTA TCCACCCTAA
  K
  CAGTCTTTGA AGAAATTGTA GACTAAGAAG ACGAAAGAAG TTGGATCATC ATATTGGAGA
  AAAAAATGAG GGAGTGAACC AGGGTAAGTT TCTGAGAGGA ATCTTAACAG CTTTAGCACC
  CAAAAAACCA GTCTGTTCCT TTTTGGGTAT GGGTGGGTGT GGGTCTATGC ATGAGTGTGC
  ATGCAGGTAT GTATGTGTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51287213	NES13770105	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37024606					SNP	T	T	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51287213	NES13770105	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38534927 () rs orientation: forward

Symbol	Name	Function Class
Luc7l2	LUC7-like 2 (S. cerevisiae)	within coordinates
Rr628841	regulatory region 628841	938 bp proximal
Tssr55661	transcription start site region 55661	926 bp downstream
Tssr55662	transcription start site region 55662	956 bp upstream