rs37025098 SNP Detail

Summary

• ID
  rs37025098
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55239990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGGGCCAG TAGGGCTGCC
  TGGTCCCATC ACCCCACACT CTCTGGCACT TTGACTTGTC TTTTGACTCA CGCTCGGGGG
  ACTTCAGGAT ATCTCTGTTT CTTTGCTTTG GAATCCTGGA AATATCCTGG CTTTCCTAGA
  AGGCTCATCT CCAGACACAA ACTTCTACTC AGTCCAGATC TTATAGGCAC AGCCTGAGCC
  R
  ATATGGGTGA CTTCCCCATT TCCTGAAGTG AAGGTGCACT TTCTCTGCCT TATTGTCTAG
  TCTAGCCTCT TCCTGTCTCA GACCCATAGA TTGGGGGGGG GGGGGGGGAG AAAACTCCTA
  TGCAAAGTCA TACGCATGCC TGTCCCTTCC CTGAAGCTGA CCTTTAAAAA GTTCCACCCC
  ATTCAATGGC AGCTTTCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51221528	NES14297444	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37025098					SNP	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51221528	NES14297444	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55239990 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	308 bp upstream
Tssr5558	transcription start site region 5558	276 bp upstream
Tssr157068	transcription start site region 157068	340 bp upstream
Tssr157069	transcription start site region 157069	367 bp upstream
Tssr157070	transcription start site region 157070	394 bp upstream