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rs37025603 SNP Detail
Summary
  • ID
    rs37025603
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:188755275 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGAGGTGAGC TATGAGGACA
    TCTGGCCCCA TGAGTTCTTC AGATATAACC TTAAGGTAAA GAGCTGAAAT AAAACGATTC
    CCTGAGAGGA AAATTAGACC AAACCCCCCA GAGAGGGAGA GGAAAATCAG ACCAAGCCCC
    CCTGAGAGGA AAAGTGAGAG CATGGAACCA GGCGGCAGAT GGAGAGACCA CACCCAACCG
    Y
    AAGACAATGC CAGAGTCTGA TCGACTGTTC ATGCAGGCTG CTCAGTCTTC ATGGGCCTGT
    GACATCATCA AACTATCCAG GTGCACACAA GTACACATGC AAGGAAGAGA GCCATGCCCA
    GAGTATTAGT GTCCTCTGAG ATTAAGACAT ACCAAATACT TAACAGATAT ACATCTTGCT
    TTTACCTGGA GAAACTGCTT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51419696 NES14448852 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs37025603 SNP T T T T T T C T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51419696 NES14448852 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:188755275 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr372621 regulatory region 372621 1911 bp upstream
Rr425741 regulatory region 425741 250 bp proximal
Rr425742 regulatory region 425742 360 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory