AGAGGTGAGC TATGAGGACA TCTGGCCCCA TGAGTTCTTC AGATATAACC TTAAGGTAAA GAGCTGAAAT AAAACGATTC CCTGAGAGGA AAATTAGACC AAACCCCCCA GAGAGGGAGA GGAAAATCAG ACCAAGCCCC CCTGAGAGGA AAAGTGAGAG CATGGAACCA GGCGGCAGAT GGAGAGACCA CACCCAACCG Y AAGACAATGC CAGAGTCTGA TCGACTGTTC ATGCAGGCTG CTCAGTCTTC ATGGGCCTGT GACATCATCA AACTATCCAG GTGCACACAA GTACACATGC AAGGAAGAGA GCCATGCCCA GAGTATTAGT GTCCTCTGAG ATTAAGACAT ACCAAATACT TAACAGATAT ACATCTTGCT TTTACCTGGA GAAACTGCTT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51419696 | NES14448852 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T | T | T | T | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs37025603 | SNP | T | T | T | T | T | T | C | T | T | T | T | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51419696 | NES14448852 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr1:188755275 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr372621 | regulatory region 372621 | 1911 bp upstream | ||||||
Rr425741 | regulatory region 425741 | 250 bp proximal | ||||||
Rr425742 | regulatory region 425742 | 360 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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