rs3702579 SNP Detail

Summary

• ID
  rs3702579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141150202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCTAGCC TGGTCTCTGG
  GCCCTACTTT CCCCCTATCT TTGTAGGCTT CGTACCCTGA TTTATGTTCC TTCCCTGTCT
  GTACCCAGGG TAAACTACAG CCCTTTCCCA GTGGGCTCAC GGGCCAGGGA CCTTTACAGT
  CCCTCTCCAA CCTAAGGGTC ACAGAACCTG TCTTTGGGGA CCATGCCATG GCACCTGAGG
  R
  CCCTCTAGGG ATGGGCAAGG GATCCTGGGA TGAGGTCAGA GAGGAACCTG AGTGATGGAG
  ATGTAAGGGG GGTGAGGAGA TGAGGACAGT CACCATGGTG GAAAGTGACC ACGGTGCAGG
  AGGGACAGCT CCCTGGCACA GGGTAGAGGA GGTGGCAATG ACACACCCAA CCTGGGCAAC
  ACGGTCCATT CCTACCACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5078788	WI_WGS_4_139165920	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3702579					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141150202 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	1051 bp distal
Gm70184	predicted gene, 70184	1832 bp upstream
Gm70191	predicted gene, 70191	1455 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40054	transcription start site region 40054	1215 bp downstream
Tssr40055	transcription start site region 40055	1202 bp downstream
Tssr40056	transcription start site region 40056	1181 bp downstream
Tssr40057	transcription start site region 40057	1120 bp downstream
Tssr40058	transcription start site region 40058	1093 bp downstream
Tssr40059	transcription start site region 40059	1069 bp downstream
Tssr40060	transcription start site region 40060	1009 bp downstream
Tssr40061	transcription start site region 40061	999 bp downstream
Tssr40062	transcription start site region 40062	368 bp downstream
Tssr40063	transcription start site region 40063	1105 bp upstream
Tssr40064	transcription start site region 40064	1165 bp upstream
Tssr40065	transcription start site region 40065	1180 bp upstream
Tssr40066	transcription start site region 40066	1309 bp upstream
Tssr40067	transcription start site region 40067	1357 bp upstream
Tssr40068	transcription start site region 40068	1409 bp upstream
Tssr40069	transcription start site region 40069	1541 bp upstream
Tssr40070	transcription start site region 40070	1626 bp upstream
Tssr40071	transcription start site region 40071	1650 bp upstream
Tssr40072	transcription start site region 40072	1695 bp upstream
Tssr40073	transcription start site region 40073	1718 bp upstream
Tssr40074	transcription start site region 40074	1743 bp upstream
Tssr40075	transcription start site region 40075	1756 bp upstream
Tssr40076	transcription start site region 40076	1783 bp upstream
Tssr40077	transcription start site region 40077	1802 bp upstream
Tssr44314	transcription start site region 44314	252 bp upstream
Tssr44315	transcription start site region 44315	1143 bp downstream
Tssr44316	transcription start site region 44316	1226 bp downstream
Tssr44317	transcription start site region 44317	1284 bp downstream
Tssr44318	transcription start site region 44318	1667 bp downstream