rs37027943 SNP Detail

Summary

• ID
  rs37027943
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38307006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCTTTAC CGACCCAGGT
  ATCTCACTGG TCCTCATGAG GTTTTGGGGG TATCTTTTTC TTTTAAATAC TTACTCTTGG
  CGAGCAGCCT ACACTTTAGG GATCTGATAT CACTGATGCA CAAGATTTGG ATTCTAAATT
  CTGTTGTTAA TGAATACAAT GGTCCTGGGT AAAAACATTT GCCTTTATGG GCCCGAATAT
  Y
  CTTATTTATG AGCGAAGAGA ATGAAGACTT TATAGAAGAT CAACAATGTA TAGAGAGAGC
  TGCAAGCTCT GCGGATATTT GCCAGTGTTT GAGATGTAAA TCATTTCATG CTGCCAAATT
  CAAAACCAGT GTCTGGCAAC ATTCCTCATT TCCTGAAATT TAAATAATGG GCTTTACCTG
  AGCACGCCTG GAATAGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51097423	NES14354863	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37027943					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51097423	NES14354863	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38307006 () rs orientation: forward

Symbol	Name	Function Class
Rr271625	regulatory region 271625	806 bp distal
Rr275880	regulatory region 275880	195 bp proximal
Rr275881	regulatory region 275881	794 bp proximal
Rr279089	regulatory region 279089	1494 bp distal
Rr279090	regulatory region 279090	1004 bp distal
Rr279091	regulatory region 279091	363 bp distal
Rr388287	regulatory region 388287	133 bp upstream