rs3703063 SNP Detail

Summary

• ID
  rs3703063
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38604320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTCCTAA GAGGCAGAAC
  ATGTTACTAA TCCAATGTTC TTTAACGTAC ATCTATAGGC AGACTAATCA GCATTAAAGC
  TTTACATAAA ATATGGATCT GGACACCCCC CCCCACCCCG CCCAGCCACG CATTTAACAT
  TCTCCCATCC TCAGGATCAC CAGTAAACAA GAGGCATTGC TGATCTGGCT TGGAACAAGT
  Y
  TCTTCCTGAA GAAACCTGCT GGAGGTGCGG ACCTCACTTC CACCCACATT CGTGTGGCTA
  CCCACTCAGG TATGCAGGCG ATCACCCCAG GGGTAATCAC CCTGGGACCA CACTCCTTAC
  CTGTAGCATG AGCCTACCCT AGGACTTGGT AACACACCCA CATTTGTGTG GCTACCCATT
  CAGATGTACA GGTGATCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss5079275	WI_WGS_16_38609329	WI	MOUSE	f	SNP	C					T
ss6336929	mCV25133504_36189093	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T	T			T	T
ss39471052	mCV25133504	ABI	CRAMUS_MOUSE	f	SNP	C	T	T			T	T
ss60446805	NES16430264	PERLEGEN	MM_PANEL2	f	SNP			T	T	T		T	T	T	C	C
ss147999300	ENSMUSSNP6245707	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs3703063					SNP	C	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60446805	NES16430264	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38604320 () rs orientation: forward

Symbol	Name	Function Class
Tssr138414	transcription start site region 138414	260 bp upstream
Tssr141114	transcription start site region 141114	433 bp upstream
Tssr141115	transcription start site region 141115	345 bp upstream
Tssr141116	transcription start site region 141116	222 bp upstream
Tssr141117	transcription start site region 141117	92 bp upstream
Tssr141118	transcription start site region 141118	304 bp downstream
Upk1b	uroplakin 1B	within coordinates