rs3703192 SNP Detail

Summary

• ID
  rs3703192
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38604386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGCATTA AAGCTTTACA
  TAAAATATGG ATCTGGACAC CCCCCCCCAC CCCGCCCAGC CACGCATTTA ACATTCTCCC
  ATCCTCAGGA TCACCAGTAA ACAAGAGGCA TTGCTGATCT GGCTTGGAAC AAGTTTCTTC
  CTGAAGAAAC CTGCTGGAGG TGCGGACCTC ACTTCCACCC ACATTCGTGT GGCTACCCAC
  Y
  CAGGTATGCA GGCGATCACC CCAGGGGTAA TCACCCTGGG ACCACACTCC TTACCTGTAG
  CATGAGCCTA CCCTAGGACT TGGTAACACA CCCACATTTG TGTGGCTACC CATTCAGATG
  TACAGGTGAT CACTCCAGGG GCGATCACCC CGGGAACCAC ACTCCTTACC TGCAGCATGA
  GCCTATCCCA GGTCTTGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss5079406	WI_WGS_16_38609395	WI	MOUSE	f	SNP	C		T
ss6336930	mCV25133494_36189159	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss39440395	mCV25133494	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss147999305	ENSMUSSNP5557891	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs3703192					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38604386 () rs orientation: forward

Symbol	Name	Function Class
Tssr138414	transcription start site region 138414	194 bp upstream
Tssr141114	transcription start site region 141114	499 bp upstream
Tssr141115	transcription start site region 141115	411 bp upstream
Tssr141116	transcription start site region 141116	288 bp upstream
Tssr141117	transcription start site region 141117	158 bp upstream
Tssr141118	transcription start site region 141118	238 bp downstream
Upk1b	uroplakin 1B	within coordinates