rs37031965 SNP Detail

Summary

• ID
  rs37031965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15894243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATACATCT GTTGGTAGGC CACCTGCATT TTCTTACTGT
  TGATGTCTCC TGCCCCAAAA AAGACATCCT TGGGGAACGG GGAGTGCTGC CCACTCCTTG
  Y
  GACCTTAGGT GACCCTGCCA CCCTCACAGC CTTCTGCTTT CCCTAAGTTA TTATTTTTGC
  ATTTTCTTGT CCATTTGTGC ATCAGACCCA TTACCCACG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss51880848	NES14893765	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C		C	C	C
ss322108790	CHEV_7_16745667	CHEVERUD	SCREENING_POP	f	SNP						T				T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs37031965					SNP	T	C	C	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51880848	NES14893765	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15894243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18359	CpG island 18359	1008 bp distal
Rr155078	regulatory region 155078	958 bp proximal
Rr160786	regulatory region 160786	1758 bp proximal
Rr164335	regulatory region 164335	339 bp proximal
Slc8a2	solute carrier family 8 (sodium/calcium exchanger), member 2	within coordinates
Tssr64587	transcription start site region 64587	124 bp downstream
Tssr64588	transcription start site region 64588	108 bp downstream