rs3703260 SNP Detail

Summary

• ID
  rs3703260
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67972105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT GCGGCGGTAA GGAGTGAAAC
  K
  CAGCTAAGGC AACACTTTCT TTCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5079474	WI_WGS_10_68187592	WI	MOUSE	f	SNP					T	G
ss38598809	mCV24239208	ABI	CRAMUS_MOUSE	f	SNP		T	T			G		T
ss47873577	NES11931369	PERLEGEN	MM_PANEL2	f	SNP	T		T	T			T	T	T		G	G	G		T
ss147146160	ENSMUSSNP6799275	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T
ss323351598	CHEV_10_67599023	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3703260					SNP	T	T	T	T	T	G	T	T	T	T	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873577	NES11931369	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67972105 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Cpgi1679	CpG island 1679	168 bp proximal
Rr384864	regulatory region 384864	within coordinates
Rr433196	regulatory region 433196	1393 bp distal
Rr433197	regulatory region 433197	within coordinates
Rr433198	regulatory region 433198	259 bp proximal
Rr433199	regulatory region 433199	341 bp proximal
Rr433200	regulatory region 433200	1904 bp proximal
Tssr3230	transcription start site region 3230	450 bp downstream
Tssr3231	transcription start site region 3231	466 bp downstream
Tssr3232	transcription start site region 3232	532 bp downstream
Tssr93877	transcription start site region 93877	728 bp upstream
Tssr93878	transcription start site region 93878	1507 bp upstream
Tssr97989	transcription start site region 97989	991 bp upstream
Tssr97990	transcription start site region 97990	974 bp upstream
Tssr97991	transcription start site region 97991	296 bp downstream
Tssr97992	transcription start site region 97992	338 bp downstream
Tssr97993	transcription start site region 97993	352 bp downstream
Tssr97994	transcription start site region 97994	375 bp downstream
Tssr97995	transcription start site region 97995	409 bp downstream
Tssr97996	transcription start site region 97996	427 bp downstream
Tssr97997	transcription start site region 97997	438 bp downstream
Tssr97998	transcription start site region 97998	504 bp downstream
Tssr97999	transcription start site region 97999	929 bp downstream
Tssr98000	transcription start site region 98000	1086 bp downstream