rs3703264 SNP Detail

Summary

• ID
  rs3703264
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:130267759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA AACAAACCAA AAAAACCAAA
  M
  CAAAACAAAA CAAAAAAACC CAGAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5079478	WI_WGS_2_131422267	WI	MOUSE	f	SNP	C			A
ss45226797	mCV22655515	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A	A
ss147596162	ENSMUSSNP6592577	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		A
ss320507192	CHEV_2_130251575	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3703264					SNP	C	C	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130267759 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pced1a	PC-esterase domain containing 1A			1067 bp upstream
Rr565055	regulatory region 565055			1710 bp distal
Rr565056	regulatory region 565056			1464 bp distal
Rr565057	regulatory region 565057			662 bp distal
Tssr20210	transcription start site region 20210			1446 bp downstream
Tssr26295	transcription start site region 26295			1546 bp upstream
Tssr26296	transcription start site region 26296			1533 bp upstream
Tssr26297	transcription start site region 26297			1111 bp upstream
Tssr26298	transcription start site region 26298			1049 bp upstream
Vps16	VSP16 CORVET/HOPS core subunit			Intron
				Noncoding-Transcript-Variant