rs37036311 SNP Detail

Summary

• ID
  rs37036311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21135703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGACTTCA CAGCCATTTT
  GGATGCTTAG TCAGGGAGGG GATGTGTGTG TGGTCCTCCA TTGTGACTGT AGTTCTGGGC
  CGAGCTTCCC GCTCTATAGG AAGTTGATTT TCCCCTTTCT CGTTGATTTT TTTGGCTTCC
  CTTTTGCTGC CTGGCACGGG TGGTGGGAAC CACACCTGGG TCCTCTTCGA TAGCATTGAG
  Y
  TCACATACCT GCTGTAACTA CAACCCTTTG CTTCCCTCAG CACAACCCCC ACCCCCCAGT
  GTGACCATAG ACTTGCCTCG TAGACAGCGT GGCATCGGCA AGTGAGCACA GACACCTGAA
  TTTGCTGCTT TGTTACTGAA TAAGCTTTCG CTGAGCAGAC CCCATCAGAA TGCCGTCCTT
  AAAAGCACGA ATGACATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51993421	NES15015898	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs37036311					SNP	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51993421	NES15015898	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21135703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21428	CpG island 21428	860 bp proximal
Gm16754	predicted gene, 16754	713 bp upstream
Rr383053	regulatory region 383053	within coordinates
Rr674755	regulatory region 674755	1092 bp distal
Rr674756	regulatory region 674756	891 bp distal
Rr674757	regulatory region 674757	318 bp proximal
Rr674758	regulatory region 674758	359 bp proximal
Rr674759	regulatory region 674759	1013 bp proximal
Rr674760	regulatory region 674760	1964 bp proximal
Tssr83977	transcription start site region 83977	956 bp upstream
Tssr83978	transcription start site region 83978	989 bp upstream
Tssr88378	transcription start site region 88378	544 bp downstream