rs3703674 SNP Detail

Summary

• ID
  rs3703674
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48768232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCAACCCA CAAGCCACAG ACCCCAGACA GCCTGAATAT
  CTATAAACAT GACCCAACAC AAAATAGAAA ACTTGCTTAA AACATTAGAA GATTTTTTTT
  W
  TAAACTCAAT TGCATGGTTC TTGAGTGTGA CTTTGTGGAT GATGTCATTG TGTCTCAATG
  TCAAAAGGTT GGGCACTCCT GTAGTGAGTT TGTTCCTCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5079892	WI_WGS_17_47500018	WI	MOUSE	f	SNP			A	T
ss145717274	ENSMUSSNP6270923	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss325408738	CHEV_17_48600529	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs3703674					SNP	T	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48768232 () rs orientation: forward

Symbol	Name	Function Class
Rr370279	regulatory region 370279	907 bp upstream
Rr528302	regulatory region 528302	683 bp distal
Rr528303	regulatory region 528303	471 bp proximal
Tssr145120	transcription start site region 145120	1151 bp upstream
Unc5cl	unc-5 family C-terminal like	within coordinates