rs37037979 SNP Detail

Summary

• ID
  rs37037979
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19278211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCCTCCC TACTGACTCC
  AGGGAACCCT CCGAGAACCC AGAAAGGGTG GAAAGATGGG GAGGAGAGGG AGCTAGTGAA
  TATAGAATTC CTCATGAAAT TAAAAAAAAG AAAATCCTGT GCCTTACAGG GTGCCCACTT
  GAGGGTAGGT TAGTGGTTAA ACTTTGTACT TGTTGTTATT TATGCTTTGA AAATATTTTT
  W
  AAAAAACTAA ACTTCAAAAA GCACATATTC AAAAGAAAAT CTACCCCAAT GCAAAATGGC
  CAAACAATAT TTGCTCTTGT ACATCTTAAA ACATTTCCCA CTGTTTCCTT AAACAGTACA
  AAGCTTAAAC CTTCTCAAAG ATTTGGGTGT TCTTGTCTCA AGTCTATCAG ATTAAAATCA
  CAAATTACAG GCAATAAACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50916980	NES13479832	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37037979					SNP	T	T	A	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50916980	NES13479832	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19278211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi65	CpG island 65	1694 bp proximal
Rr408233	regulatory region 408233	1832 bp distal
Rr408235	regulatory region 408235	1463 bp distal
Rr408236	regulatory region 408236	1593 bp distal
Rr408237	regulatory region 408237	97 bp distal
Rr408238	regulatory region 408238	766 bp proximal
Rr408239	regulatory region 408239	984 bp proximal
Tfap2b	transcription factor AP-2 beta	927 bp upstream
Tssr6030	transcription start site region 6030	953 bp upstream
Tssr6031	transcription start site region 6031	996 bp upstream
Tssr6032	transcription start site region 6032	1011 bp upstream
Tssr6033	transcription start site region 6033	1027 bp upstream
Tssr6034	transcription start site region 6034	1051 bp upstream
Tssr6035	transcription start site region 6035	1083 bp upstream
Tssr6036	transcription start site region 6036	1107 bp upstream
Tssr6037	transcription start site region 6037	1125 bp upstream
Tssr6038	transcription start site region 6038	1153 bp upstream
Tssr6039	transcription start site region 6039	1168 bp upstream