rs37038226 SNP Detail

Summary

• ID
  rs37038226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36349109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCACTTC CTTGCCATCA
  CAAGAAGGGT GACTGGGGTA AGCAAACCAA GAAGAGGGAG GGAAAGTGGT AGCCGTGTCT
  GCGCCTGCTC AGGGGGGTGA GCCTTGAACC CTGTCTGAGC CTCAGTGGTC TCAGATCAGG
  TACACACTTC CCACATACTT AGGTCAGTCT GTCAGGAGCA CCCTAGGGAG AATCGGATAC
  R
  TGGGGACAGG CAGGTGTCAG TGAGGTGATC TGTAGGGAGA AGCATCATTT CTTGCTTTCT
  TCTGCTTAGA ATACTGGCTA TGGAGCCTAG CACACCCATC TCACAGATAA GGGGAGAGAG
  CTATAGAAAC AGTGCTGGAG GTGATAAAAG ATGCACCCAG CTTGGCATGG TGGTGTATGC
  CTATAGTCCC AACACTAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51238009	NES14282191	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37038226					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51238009	NES14282191	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36349109 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Cpgi139	CpG island 139	1459 bp distal
Rr366864	regulatory region 366864	1862 bp downstream
Rr409285	regulatory region 409285	within coordinates
Rr409286	regulatory region 409286	758 bp proximal
Tssr6256	transcription start site region 6256	1953 bp downstream
Tssr6257	transcription start site region 6257	1879 bp downstream
Tssr6258	transcription start site region 6258	1747 bp downstream
Tssr11252	transcription start site region 11252	405 bp upstream