rs37039475 SNP Detail

Summary

• ID
  rs37039475
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:36269162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGACTTCA AGGCCTCCCT
  GAAGGTCCCA GCCCCTCCGT CTCATGGGCA ATTGCTAGCA ATTTTTTCTC ATAAATGGTA
  GAGGAGGGTG CAATGCTGAA ATGGGTTGGA GCCTTAGCCC TGGGCTATTT TCTCACCCTC
  AGAAGAACTT GAGACTGAAG TAAGTAACAC TTCAGATTTT TACATGGTTT TCTTACTTGA
  R
  AAGAGTTATG ACTTTTGGCA GTGCATAGTT TTCTCATTTT AATGAGTGGA GTCTAGTCTC
  AGATGGCAAA TGAGGCTCCT AAGAACCTAG CATGTGGACA TCACTGCCCA AACGTTAGGC
  ATCTCCTGAG TGCATTTCCA GAAAGCACTT TCTTTTTAAC TGAATTCAAG GAAATGACCC
  CATGCCAAGC TTCTCAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50978565	NES14418268	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G		G	G	A	G
ss137628429	ENSMUSSNP620799	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37039475					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978565	NES14418268	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36269162 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm60325	predicted gene, 60325			within coordinates
Lrrc72	leucine rich repeat containing 72			Intron
				Noncoding-Transcript-Variant
Tssr116139	transcription start site region 116139			976 bp upstream
Tssr116140	transcription start site region 116140			958 bp upstream