rs37039779 SNP Detail

Summary

• ID
  rs37039779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:188737228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATAACTT CTGACACTAC
  ATGTTCATCA CTTTCAGGAA ACCATATTAA AGCACACAAG CCTGCTTACA ATCACTAGCA
  TGGAGGACAC AGCTATAGTC ACAGCACACA GGAGGTGGGT CAGGCCTACA CAGACAGTAG
  GAAGGAAACC TTCGCTGCAC AGCCAATCAG TATCAAGTCT ACCCACAAAA CAATCTGCAA
  Y
  CTCTGGGCAA AGAGACTGGA AAACATATAT ATGATTAACA TATTTTTTAT TTTTAATCTC
  CTATCTCAAG TGTGCCAAAG AAAAGATGAC TAAAGAAATT AGCATATCTG GTGATGTAGC
  ATACCCACTC TAGTGGCTTG CTACAAAATC TGAACTATGA AGCTAAACAT GAAACTATGA
  AGTAAAGTGA TTTGCTATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51419790	NES14449060	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37039779					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51419790	NES14449060	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188737228 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1193	CpG island 1193			1934 bp proximal
Kctd3	potassium channel tetramerisation domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr372619	regulatory region 372619			231 bp upstream
Rr425737	regulatory region 425737			1229 bp proximal
Rr425738	regulatory region 425738			1874 bp proximal