rs37040032 SNP Detail

Summary

• ID
  rs37040032
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:59678996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCAATTGC CAGGGGCCAA CTGCGGAGCC TTTGCCCTTC
  TCGAGAGTTC ATCCTTTGAC ATACATGGAC AGCAGGTTGT GTGAGAGTAG TTTTATTCAT
  R
  AGCATGCCGC CAGCATTCAT TCAATGACGT TAGAAAAAAA GAGAGAAATA AAATAAAATA
  AAAAGGAGAA ACGGGAAGTA AACTAGTGTT TGTCATGCTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51516755	NES14634625	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37040032					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51516755	NES14634625	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59678996 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cab39l	calcium binding protein 39-like			Intron
				Noncoding-Transcript-Variant
Cpgi6560	CpG island 6560			216 bp distal
Gm45935	predicted gene, 45935			667 bp upstream
Rr404137	regulatory region 404137			489 bp downstream
Rr493049	regulatory region 493049			683 bp distal
Rr493050	regulatory region 493050			556 bp distal
Rr493051	regulatory region 493051			within coordinates
Setdb2	SET domain, bifurcated 2			667 bp upstream
Tssr125903	transcription start site region 125903			965 bp downstream
Tssr125904	transcription start site region 125904			551 bp downstream
Tssr129008	transcription start site region 129008			660 bp upstream
Tssr129009	transcription start site region 129009			450 bp upstream
Tssr129010	transcription start site region 129010			439 bp upstream
Tssr129011	transcription start site region 129011			240 bp upstream
Tssr129012	transcription start site region 129012			237 bp upstream
Tssr129013	transcription start site region 129013			230 bp upstream