rs3704163 SNP Detail

Summary

• ID
  rs3704163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170418971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA TTAGCAACTT TTGTTGTATA
  R
  ATCTGTTGTG ACTGCTGATA TTGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5080384	WI_WGS_1_171876838	WI	MOUSE	f	SNP			G	A
ss45029240	mCV24430345	ABI	CRAMUS_MOUSE	f	SNP		G		A	A
ss146138613	ENSMUSSNP2133114	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			A
ss320111489	CHEV_1_172521533	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3704163					SNP	G	G	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170418971 () rs orientation: forward

Symbol	Name	Function Class
Cpgi994	CpG island 994	1129 bp distal
Nos1ap	nitric oxide synthase 1 (neuronal) adaptor protein	1600 bp upstream
Rr423086	regulatory region 423086	1552 bp distal
Rr423087	regulatory region 423087	1051 bp distal
Tssr14920	transcription start site region 14920	1633 bp upstream
Tssr14921	transcription start site region 14921	1548 bp upstream