rs37041680 SNP Detail

Summary

• ID
  rs37041680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:75650064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTAAGA AAAAGTAAAG
  AAAATAAAAC ATTATATGGA ATTCCAATGA AAGAAACAGA TCAGTGATCA ACCTCCCAAG
  TAGCTGGGAT TATGGATGTG GTCATCATGG CCAGCAAGAA TTATATTTTT ATGTGTATGA
  CAAATAGATT GATTTGAAGT TAGTTTTGAC TGAAATCCTT TCCCCAATGT CTAGTTCTCT
  R
  AAGCAGGAAT ATCTATGGGA GAGTTTTTTT ATGCTTTTGG CAAACAGCAG TTTCTCAGCC
  CCAGAAGCAC TGACAGGGAA GAACAGATGA GACTCATCAC CTCCCATTCC TTTGAGCATC
  TTTAAACAGT TAATGTTTCT TAGGAGGGGT GCATCATTTT CTTCACTGAG AAAGGCACTG
  ATAAGTTATC CATGCTCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51555806	NES14685305	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	A	A	A	A	A	A	G	G	A
ss135330153	ENSMUSSNP1109357	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37041680					SNP	A	G	A	A	A	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51555806	NES14685305	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75650064 () rs orientation: forward

Symbol	Name	Function Class
Rr397722	regulatory region 397722	693 bp upstream