rs37041772 SNP Detail

Summary

• ID
  rs37041772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:114337865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAATACA ATCATGAAGT
  CAGAGACTCT CATTCCCTTC AAATACCTCA TGCTTCCCAC TAGACCTGTA GAGTTCCCAC
  TAAAAGGGCA CGCCTACAGA CGCTCCTAAC AGATAAAACG GCTTTCTCTT GAAGAGAAGA
  GAGACCTAAA GGCCTTTAAT GGTGGAAGGT TCTCCATCCG GTCAGAGAAG CAGCTCCTAC
  Y
  GCTGTCTGCG GAACAGGATT TGTGGCAGGG AAAGCCAGAC TGGCTGAGAA CTACTTGGGT
  GAACGACGAC ACTGACCAGA CAGCTCTTAT TCAAGGTCAA ACGTTTGTCT AAGAAATCAA
  TCCTGCATCC CTGAACATCC CTGCATCTAG AGAGGGTCTC CCACATCCAC ACCCTCCCCA
  CTGGATTAAT ACTAGCCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52042484	NES15055428	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37041772					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52042484	NES15055428	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114337865 () rs orientation: forward

Symbol	Name	Function Class
Rr198888	regulatory region 198888	1136 bp proximal
Rr207539	regulatory region 207539	736 bp proximal
Rr368881	regulatory region 368881	1181 bp upstream