rs37042376 SNP Detail

Summary

• ID
  rs37042376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60724710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGAGAAA AGTCAGTACT
  ACTTAAGATT TTCAGTTTTC TCTGCTTCTC ATAAGTTTGT AAAAAGTTTT ATTAGGTGAC
  ACCCGTGACC ACTAGGAGAA GACCTTTTGC CACCTCAGTA AGTTCACTTC AGTTTCGTTT
  AATCAGACTC AACCCTGACT GTGTTTTGAG GTACAGAGTC TCGCTGAAAT TTTGCTGATA
  Y
  GTTAAAGTTC ATCTTATTAC TATATAATGA GACCCGAATA GCTGGCGGGT GTGTGGTACC
  TCCATCTAGA GTCTCCCAGT GGAGGAGGAA GCTTGGCATG GGGGGGGGGC CAGAACAATG
  GCAGTATGTC AGTCAAGGCT GTAAAGTGAC CCTGACGGAG GCGTGGTCGC TCCTCCATCT
  TCCCTTCTCT ATCTCTGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50715219	NES14255730	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37042376					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50715219	NES14255730	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60724710 () rs orientation: forward

Symbol	Name	Function Class
Rr196167	regulatory region 196167	1691 bp proximal
Rr201055	regulatory region 201055	891 bp proximal
Rr209916	regulatory region 209916	within coordinates
Rr209917	regulatory region 209917	291 bp proximal
Rr209918	regulatory region 209918	1891 bp proximal
Uaca	uveal autoantigen with coiled-coil domains and ankyrin repeats	within coordinates