rs3704325 SNP Detail

Summary

• ID
  rs3704325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38604513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGTTTC TTCCTGAAGA
  AACCTGCTGG AGGTGCGGAC CTCACTTCCA CCCACATTCG TGTGGCTACC CACTCAGGTA
  TGCAGGCGAT CACCCCAGGG GTAATCACCC TGGGACCACA CTCCTTACCT GTAGCATGAG
  CCTACCCTAG GACTTGGTAA CACACCCACA TTTGTGTGGC TACCCATTCA GATGTACAGG
  Y
  GATCACTCCA GGGGCGATCA CCCCGGGAAC CACACTCCTT ACCTGCAGCA TGAGCCTATC
  CCAGGTCTTG GTGACCCCGT TGTTCTTCCA TTCGTCGTCA TTGGTTGGGG GACTGTTGTT
  TTGATACCTC ATCAGCATCT GCTTCAGGAA GAGGTTGGTT GTGAACTGCA GGGGTGAGAA
  TGACACGAGA GAGTCAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss5080546	WI_WGS_16_38609522	WI	MOUSE	f	SNP	C						T
ss6336931	mCV25133493_36189286	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T					T		T
ss39460839	mCV25133493	ABI	CRAMUS_MOUSE	f	SNP	C	T					T		T
ss60446803	NES16430266	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	T		T	T	T	T	T	T	C
ss147999309	ENSMUSSNP814262	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs3704325					SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60446803	NES16430266	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38604513 () rs orientation: forward

Symbol	Name	Function Class
Tssr138414	transcription start site region 138414	67 bp upstream
Tssr141114	transcription start site region 141114	626 bp upstream
Tssr141115	transcription start site region 141115	538 bp upstream
Tssr141116	transcription start site region 141116	415 bp upstream
Tssr141117	transcription start site region 141117	285 bp upstream
Tssr141118	transcription start site region 141118	111 bp downstream
Upk1b	uroplakin 1B	within coordinates