rs37046969 SNP Detail

Summary

• ID
  rs37046969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86414769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACCACTT GAGGCAGTTG
  CTAGGAACTA ACTAGCCATG TGATCCAGGT ATAAATATGA ATGCTTTTGA ACTTAACAGC
  AAATAAAAAT TGTGGCGAGA GGAAACATCT CTTTTTTTAG TTCCTTCAGT TTCTGAAACA
  ATATTAGAAA AATCTGATCC CAGAAAAGGG CCACTGTAAC GGAGAAAAGT AAAATTTGGC
  Y
  AGAGCAAAGC AATTGTGCCT ACAGCGCACC ACCAGTAGGT GTCCAAGCTA TGGGAACACA
  CCGGCCTCAC CTAAGGCACC ATAGCTTTCC GAGTGTTTCT GAAGTGCGGT GGTGGCACAT
  GTCTTTAATC CCAACACATT GGAGGGAAGA GGCCCGCGGA TCTATGTTCG AGACCAGCCT
  GATCTACAGA AAGAGTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51753268	NES14806738	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37046969					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51753268	NES14806738	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86414769 () rs orientation: forward

Symbol	Name	Function Class
C87436	expressed sequence C87436	587 bp upstream
Cpgi17664	CpG island 17664	303 bp proximal
Gm44790	predicted gene 44790	within coordinates
Gm66311	predicted gene, 66311	within coordinates
Rr368111	regulatory region 368111	727 bp upstream
Rr399735	regulatory region 399735	400 bp upstream
Tssr57468	transcription start site region 57468	573 bp upstream
Tssr57469	transcription start site region 57469	628 bp upstream
Tssr57470	transcription start site region 57470	879 bp upstream
Tssr57471	transcription start site region 57471	927 bp upstream
Tssr57472	transcription start site region 57472	961 bp upstream
Tssr61792	transcription start site region 61792	831 bp downstream