rs3704759 SNP Detail

Summary

• ID
  rs3704759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121125990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGCT AAGGCTGAGG CCGGAGCCGA
  Y
  GCCTCCATGA GGGGCTCCCT CCCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5080984	WI_WGS_2_122261974	WI	MOUSE	f	SNP			T	C
ss45213992	mCV23082189	ABI	CRAMUS_MOUSE	f	SNP	T	T		C	T
ss147383139	ENSMUSSNP6111190	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			T
ss320482563	CHEV_2_121121245	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3704759					SNP	T	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121125990 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm14978	predicted gene 14978			within coordinates
Map1a	microtubule-associated protein 1 A			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr373768	regulatory region 373768			211 bp downstream
Rr563799	regulatory region 563799			45 bp distal
Rr563800	regulatory region 563800			within coordinates
Rr563801	regulatory region 563801			489 bp proximal
Rr563802	regulatory region 563802			1997 bp proximal
Tssr19740	transcription start site region 19740			23 bp downstream