rs3704804 SNP Detail

Summary

• ID
  rs3704804
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155428156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAAAAGGGGA GAAAGAAGTG GGATTGGGAA TGAAAAGAAG CAGCAAAATA CAGCAAGGCT
  GATCTAGTAA GCGCCTTTGC ACACAAAGAG GGAGAAAGGG CTGACTGCAG AGGTATACAA
  GACAGCAAGC ACAGCCACTC AGAGACGAGA CAGGAGAGTA GGAAAGTATC TCAGGATGTT
  GTCAAGCTGG TCTCAAATTC ATGCTTTTAA GCAATCCTCC TGCCTCATAA GTGCGACTGA
  GCCCAGGAGA AGGAGTATGA TACAGAGAAA CCCTGTCTCA AAATGCCAAA GTGTGTGTGT
  R
  TACGCACTCG CACACACACC TTTGATGTAC CAATGAGTGT TTAATCTTTG TATCATAAAA
  CAATACTATT GAGTGTTACC ATTAGGGGAA AGTATGCCTA AGAGTAAGTA GAATAAGCAA
  CTAAATGAGA ACTGAAATTT GGCCTTTATT TTTTTCCTCC TCCTCCTCCT TCTCCTTCAG
  ATTTATTGAC TTTATAACTT TATATATGCG AGTACACTAT TGTTCTCTTA GACACACCAG
  AAGGGGGCAT CAGATCCCAT TACAGATGGA TGTGAGCCAC CATGTGGTTG CTGGGAATTG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5081029	WI_WGS_2_156418208	WI	MOUSE	f	SNP	A			G
ss45267501	mCV22922090	ABI	CRAMUS_MOUSE	f	SNP		A	G	G	G
ss148055309	ENSMUSSNP1941305	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3704804					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155428156 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gss	glutathione synthetase			Intron
				Noncoding-Transcript-Variant
Rr568067	regulatory region 568067			1743 bp distal
Rr568068	regulatory region 568068			1888 bp distal
Rr568069	regulatory region 568069			312 bp distal
Rr568070	regulatory region 568070			233 bp proximal