rs37048158 SNP Detail

Summary

• ID
  rs37048158
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101075653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACAAACA TTCATAATTA
  TCGTAATAAA ATCTACTGAT TTAAACTTAA AAAAATAAGT TTTCTACAGG AATTCTTGCT
  TTCTACTATG CTTGATAAAT ATTTAGTAAG TTGTATTTAT TGTCTGCAAA ACAGGATTCC
  TCCCTACAGG ATAAAAATGT GAGTACTGTA CTCCGGGTCC AGAAGCTCTA TTTTTAAACC
  W
  GCTGGAATCC CTCTACAAAT AGCTTTCTGT AAATAGCTGA ATAGCGAACA CAGATTAATT
  CCTTGACCTA ATATCAAGAT ACAAGAGAGT AATAAAATTA TTTGTGTGTT AGTTTACTGG
  GGGGGGGGGT TGTATTAGTA ATTAAAACAT TTAAAAGAAA CACCCAAGTT TCAAACCTGT
  GTCTGCTGAA ATGACTTCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50785735	NES14211491	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		T	T	T		A
ss323148489	CHEV_9_101100784	CHEVERUD	SCREENING_POP	f	SNP										T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37048158					SNP	A	A	A	A	A	A	A	A	A	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50785735	NES14211491	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101075653 () rs orientation: forward

Symbol	Name	Function Class
Gm67595	predicted gene, 67595	within coordinates
Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha	within coordinates
Rr685595	regulatory region 685595	609 bp proximal
Tssr91107	transcription start site region 91107	486 bp downstream
Tssr91108	transcription start site region 91108	522 bp downstream
Tssr91109	transcription start site region 91109	545 bp downstream
Tssr91110	transcription start site region 91110	627 bp downstream