rs3704816 SNP Detail

Summary

• ID
  rs3704816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170419100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA CATTAGCTTA CATTCCTAAC
  R
  CTATCCATCA AGGTCTATTC CCTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5081041	WI_WGS_1_171876967	WI	MOUSE	f	SNP			G	A
ss45000768	mCV24430343	ABI	CRAMUS_MOUSE	f	SNP		G		A	A
ss146138621	ENSMUSSNP5813247	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			A
ss320111491	CHEV_1_172521662	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3704816					SNP	G	G	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170419100 () rs orientation: forward

Symbol	Name	Function Class
Cpgi994	CpG island 994	1258 bp distal
Nos1ap	nitric oxide synthase 1 (neuronal) adaptor protein	1729 bp upstream
Rr423086	regulatory region 423086	1681 bp distal
Rr423087	regulatory region 423087	1180 bp distal
Tssr14920	transcription start site region 14920	1762 bp upstream
Tssr14921	transcription start site region 14921	1677 bp upstream