rs3704846 SNP Detail

Summary

• ID
  rs3704846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170419116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCC TAACACTATC CATCAAGGTC
  Y
  ATTCCCTTAT TTGGTCACTT TTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5081072	WI_WGS_1_171876983	WI	MOUSE	f	SNP			C	T
ss146138625	ENSMUSSNP4547050	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			T
ss320111492	CHEV_1_172521678	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3704846					SNP	C	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170419116 () rs orientation: forward

Symbol	Name	Function Class
Cpgi994	CpG island 994	1274 bp distal
Nos1ap	nitric oxide synthase 1 (neuronal) adaptor protein	1745 bp upstream
Rr423086	regulatory region 423086	1697 bp distal
Rr423087	regulatory region 423087	1196 bp distal
Tssr14920	transcription start site region 14920	1778 bp upstream
Tssr14921	transcription start site region 14921	1693 bp upstream