rs3704973 SNP Detail

Summary

• ID
  rs3704973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149416440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGAGGAG ATTGAGGTTA
  TTTGTTTGTG TCAGCCACTG TGTCCTGGGA GCACATGACT AAATTCTGCT TTTTTACATA
  AGGGTGAGCA CAGATGCGAA CCAAGCATAG GTCACTGGCC CATTACTGTC CATACTTAGA
  GGGGAGCTTT GCTCTAGTCA CCGCTGGTTC CCTAGGCTCA CATGAGTGGG CATGGTGGCC
  R
  TCACACGTGT ACTCCTTCCT TCCCTCCTAG CGCAGGCTAC ATGGTGAGGC CATACTCAAC
  AGAGCACAGT AAGCCAAATC ACCAGGCAAC AGCTGAGCAT CGTCACTCAC TGAAACCAAC
  ACTTCCTAAT GCCACATTTC CCACAGCACT GAACCCCTCC TATAAGCAGG TGACTGACAT
  CATTTGTAGA AATGCGAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5081199	WI_WGS_4_144717016	WI	MOUSE	f	SNP	A							G
ss46702674	NES10938133	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	G	G	G	G	G	G
ss148031395	ENSMUSSNP2261745	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3704973					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46702674	NES10938133	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149416440 () rs orientation: forward

Symbol	Name	Function Class
Rr604892	regulatory region 604892	1281 bp distal
Ube4b	ubiquitination factor E4B	Intron